Co-located Event Tutorial Workshop Main Conference
Co-located Event Tutorial Workshop Main Conference
09:00 RSE-eScience-2023: Research Software Engineers in eScience: Sustainable RSE Ecosystems within eScience
Scientific Workflows at Scale using GNU Parallel
10:30 BREAK
11:00 RSE-eScience-2023: Research Software Engineers in eScience: Sustainable RSE Ecosystems within eScience
Scientific Workflows at Scale using GNU Parallel
12:30 LUNCH
14:00 eScience23: Welcome
14:30 eScience23 Keynote: Convergence Research at the Digital Continuum
İlkay Altıntaş, University of California San Diego
Room: PANORAMA Session Chair: Rosa Filgueira
15:30 BREAK
16:00 Special Session: Future of eScience I
  • Toward Democratizing Access to Science Data: Introducing the National Data Platform
    Parashar, Altintas
  • Let's Put the Science in eScience
    Kesselman, Schuler, Foster
  • Reproducible eScience: The Data Containerization Challenge
  • From eScience to Impact on the Economy and Society
    Watson, Hodgson
  • e-Science: The Long View
    De Roure, Willcox
Session 1: Computational Science for Sustainable Development
Room: MEGARON G Session Chair: Antonella Galiza
  • Detection and Tracking of Dynamic Ocean Carbon Uptake Regimes Built upon Spatial Target-Driver Relationships via Adaptive Hierarchical Clustering
    Mohanty, Kazempour, Patara, Kröger
  • Reconstruct Geospatial Data from Ultra Sparse Inputs to Predict Climate Events
    Landt-Hayen, Kröger, Rath, Claus
  • Demystifying the Performance of Data Transfers in High-Performance Research Networks
  • OCSRL: An Model-Based Reinforcement Learning Approach to Optimize Energy Consumption of Cooling Systems
    Kaushik, Naik
17:30 Posters short talks (1-min short talks)
18:00 Poster reception
Welcome Cocktail is the first social gathering between all conference delegates and it will take place at the Venue Hotel. It will be a relaxing evening during which delegates will have the opportunity to view poster presentations, talk to colleagues and peers and enjoy local drinks and ample canapés.


Session Chairs: Rosa Filgueira, Rafael Ferreira da Silva

  1. Normality of I-V Measurements Using ML
    Anees Al-Najjar, Nageswara Rao, Craig Bridges and Sheng Dai
  2. Enhancing AIS Vessel Trajectories via Trip Detection
    Mirjam Bayer, Sören Dethlefsen, Tabea Fry and Peer Kröger
  3. LexiFuse+: A Unified One-Class Solution for Imbalanced Short-text Classification
    Saugata Bose and Guoxin Su
  4. Symbolic Regression applied to Cosmology: An approximate expression for the density perturbation variance
    Ana Carvalho, David Magalhaes Oliveira, Alberto Krone-Martins and Antonio da Silva
  5. Scalable infrastructure for galaxy image analysis: I. Measuring Position Angles with Radon transforms
    Neo Chen and Alberto Krone-Martins
  6. Project Presentation: Recursive Functions and Ontology Engineering
    Irakli Chitaia, Roland Omanadze and Mikheil Rukhaia
  7. Towards a Knowledge Graph enhanced automation and collaboration framework for Digital Twins
    Vasileios Christou, Yuandou Wang and Zhiming Zhao
  8. Emulating Hydrodynamics from Dark Matter 3D Density Fields
    Miguel Conceição, Alberto Krone-Martins and Antonio da Silva
  9. Example evaluations of plagiarism cases using FAIR Metrics and the PDP-DREAM Ontology
    Adam Craig, Anousha Athreya and Carl Taswell
  10. Visualization and Labeling of Terrestrial LiDAR Data for Three-Dimensional Fuel Classification
    Ivannia Gomez Moreno, Isaac Nealey, Daniel Roten, Mai Nguyen, Daniel Crawl, Kate O'Laughlin, Melissa Floca, Scott Pokswinski and Ilkay Altintas
  11. Detection of Component Degradation: A Study on Autoencoder-based Approaches
    Dario Guidotti, Laura Pandolfo and Luca Pulina
  12. Verifying Neural Networks with SMT: An Experimental Evaluation
    Dario Guidotti, Laura Pandolfo and Luca Pulina
  13. Mobilise-D: Experiences of processing large medical data sets using Cloud Computing resources
    Hugo Hiden and Paul Watson
  14. CWL-FLOps: A Novel Method for Federated Learning Operations at Scale
    Chronis Kontomaris, Yuandou Wang and Zhiming Zhao
  15. Integrating R in a distributed scientific workflow via a Jupyter-based Environment
    Mariantonietta La Marra, Diederik Blanson Henkemans, Jessica Titocci, Spiros Koulouzis, Ilaria Rosati and Zhiming Zhao
  16. A Digital Twin for Climate Extremes using Artificial Intelligence
    Christian Pagé and Anne Durif
  17. Using Fourier Coefficients and Wasserstein Distances to Estimate Entropy in Time Series
    Scott Perkey, Ana Carvalho and Alberto Krone-Martins
  18. Implementing a FAIR Information System for Archaeology-Related Interdisciplinary Research
    Steffen Strohm, Hartwig Buenning and Matthias Renz
  19. Accelerating the Design of Scientific Workflows with Simulation-Based Rapid Prototyping
    Frédéric Suter
  20. Semi-Supervising an Anomalous Universe
    David Sweeney, Alberto Krone-Martins, Peter Tuthill and Richard Scalzo
  21. Automatic green land-use generator for urban areas
    Veronica Vidal, Carlos Carrillo, Ana Cortés, Alba Badia and Gara Villalba
  22. Design by Contract Revisited in the Context of Scientific Data Analysis Workflows
    Anh Duc Vu, Jan Arne Sparka, Ninon de Mecquenem, Timo Kehrer, Ulf Leser and Lars Grunske
  23. Automating the Evaluation of Datasets for FAIR and CARE Principles
    Rujula Yete, Shweta Purawat, Ismael Perez, Daniel Crawl and Ilkay Altintas
Co-located Event Tutorial Workshop Main Conference
09:00 eScience23 Keynote: Embodied Agents as Scientific Assistants
Ian T. Foster, University of Chicago and Argonne National Laboratory
Room: PANORAMA Session Chair: Rafael Ferreira da Silva
10:00 Session 2: Best Paper Candidates
Room: PANORAMA Session Chair: Anirban Mandal
  • A Network Synthesis and Analytics Pipeline with Applications to Sustainable Energy in Smart Grid
    Thorve, Kishore, Machi, Ravi, Marathe
10:30 BREAK
11:00 Session 2: Best Paper Candidates
Room: PANORAMA Session Chair: Anirban Mandal
  • Tomo2Mesh: Fast porosity mapping and visualization for synchrotron tomography
    Tekawade, Nikitin, Satapathy, Liu, Zhang, Kenesei, Zheng, De Carlo, Foster, Kettimuthu
  • TrueTrees: A Scalable Workflow for the Integration of Airborne LiDAR Scanning Data into Fuel Models for Prescribed Fire Simulations
    Roten, Wells, Crawl, Parsons, Marcozzi, Linn, Hiers, Altintas
  • Driving Next-Generation Workflows from the Data Plane
    Suter, Ferreira da Silva, Gainaru, Klasky
  • Asynchronous Decentralized Bayesian Optimization for Large Scale Hyperparameter Optimization (** also best student paper candidate)
    Egele, Guyon, Vishwanath, Balaprakash
12:30 LUNCH
14:00 Special Session: Future of eScience II
  • Democratization of AI: Challenges of AI Cyberinfrastructure and Software Research
    Plale, Khan, Morales
  • Discovery Testbed: an Observational Instrument for Broadband Research
    Keahey, Feamster, Martins, Powers, Richardson, Schrubbe, Sherman
  • Research Software Engineering in 2030
    Katz, Hettrick
  • Tracking Material Reuse across Construction Supply Chains
    Wilson, Adu-Duodu, Li, Sham, Wang, Solaiman, Perera, Ranjan, Rana
  • APPFLx: Providing Privacy-Preserving Cross-Silo Federated Learning as a Service
    Madduri, Li, He, Huerta, Chard, Kim, Ryu, Kindratenko, Hoang, Chaturvedi, Giger, Fuhrman
Session 3: Best Student Paper Candidates
Room: MEGARON G Session Chair: Weronika Filinger
  • Truck Speed Detection through Video Streams (** also best paper candidate)
    Huang, Sinnott, Ehinger
  • FAIRSECO: An Extensible Framework for Impact Measurement of Research Software
    Deekshitha, Farshidi, Maassen, Bakhshi, Nieuwpoort, Jansen
  • Contract-Driven Design of Scientific Data Analysis Workflows
    Vu, Sparka, De Mecquenem, Kehrer, Leser, Grunske
  • frances: Cloud-Based Historical Text Analysis with Deep Learning and Parallel Processing
    Yu, Charlton, Askins, Terras, Filgueira
15:30 BREAK
16:00 Special Session: Future of eScience III
  • Why we need a Research Data Reference Architecture
    Abramson, Betbeder-Matibet, Bird, Carroll, Francis, Goscinski, Soo, Swan, Walsh, Wightwick, Wilkinson
  • From Workflows to Teamflows in eScience: Integrating Collaborative Science, AI, and Computing for Impact at Scale
  • How Is Artificial Intelligence Changing Science?
  • Beyond the Fourth Paradigm — The Rise of AI
    Marek, Rampp, Reuter, Laure
  • eScience serverless data storage services in the edge-fog-cloud continuum
    Sánchez-Gallegos, Carrizales-Espinosa, Gonzalez-Compeán, Carretero
Session 4: FAIR and Research Infrastructures for eScience
Room: MEGARON G Session Chair: Daniel S. Katz
  • Can Automated Metadata Extraction make Scientific Data More Navigable?
    Skluzacek, Chard, Foster
  • PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs
    Hategan-Marandiuc, Merzky, Collier, Maheshwari, Ozik, Turilli, Wilke, Wozniak, Chard, Foster, Ferreira da Silva, Jha, Laney
  • Virtual Patient Platform and Data Space for Sharing, Learning, Discussing, and Researching
    Santanchè, Mattosinho, Mota, Pantoja, Leite, Tonelli, Valente, Martins, Queirós, Grangeia, Carvalho Filho
  • Towards Lightweight Data Integration using Multi-workflow Provenance and Data Observability
    Souza, Skluzacek, Wilkinson, Ziatdinov, Ferreira da Silva
17:45 Departure for Tour & Conference Dinner
18:00 Tour, Banquet, Awards, eScience 2024 revealed We will get together at the lobby of the Venue Hotel, from where we will promptly depart in air-conditioned coaches for a city tour. A professional guide will tell us about the history of Cyprus and Limassol Town in particular. Dinner will take place at a restaurant serving scrumptious dishes of Cypriot cuisine complimented with local drinks and desserts. There will also be folkloric entertainamnt.
Co-located Event Tutorial Workshop Main Conference
09:30 eScience23 Keynote: From Data to Impact
Paul Watson, Newcastle University
Room: PANORAMA Session Chair: George Papadopoulos
10:30 BREAK
11:00 Session 5: Applications and AI
Room: PANORAMA Session Chair: Jay Lofstead
  • Online Boosted Gaussian Learners for in-situ Detection and Characterization of Protein Folding States in Molecular Dynamics Simulations
    Sahni, Carrillo-Cabada, Kots, Caino-Lores, Marquez, Deelman, Cuendet, Weinstein, Taufer, Estrada
  • Real-Time Vehicle Passenger Detection through Deep learning
    Sinnott, Gu
  • FlyPaw: Optimized Route Planning for Scientific UAV Missions
    Grote, Lyons, Thareja, Papadimitriou, Deelman, Mandal, Calyam, Zink
  • Reversible Network Covert Channel by Payload Modulation in Streams of Decimal Sensor Values
    Heßeling, Keller, Litzinger
Session 6: Programming and Optimization
Room: MEGARON G Session Chair: Tyler Skluzacek
  • Entangled, a Bidirectional System for Sustainable Literate Programming
  • Quantum Computer Simulations at Warp Speed: Assessing the Impact of GPU Acceleration
    Faj, Peng, Wahlgren, Markidis
  • Lazy Python Dependency Management in Large-scale systems
    Kamatar, Sakarvadia, Hayot-Sasson, Chard, Foster
  • In-Situ Techniques on GPU-Accelerated Data-Intensive Applications
    Ju, Li, Perez, Bellentani, Jansson, Markidis, Schlatter, Laure
Session 7: Frameworks for eScience
Room: MEGARON B Session Chair: Zhiming Zhao
  • RepoGraph: A Novel Semantic Code Exploration Tool for Python Repositories based on Knowledge Graphs and Deep Learning
    Williams, Filgueira
  • Mapping the Repository Landscape: Harnessing Similarity with RepoSim and RepoSnipy
    Li, Filgueira
  • CKN: An Edge AI Distributed Framework
    Withana, Plale
  • An Automation Framework for Comparison of Cancer Response Models Across Configurations
    Wozniak, Jain, Wilke, Weaver, Partin, Brettin, Stevens
12:30 LUNCH
14:00 Session 8: Data Retrieval
Room: PANORAMA Session Chair: Robert Schuler
  • Reproducible Query Processing and Data Citation of in situ Soil Moisture Data
    Staudinger, Hajszan, Miksa, Himmelbauer, Aberer, Rauber, Dorigo
  • Building Lightweight Semantic Search Engines
    Rovatsos, Filgueira
  • Database Evolution, by Scientists, for Scientists: A Case Study
    Schuler, Singla, Vallat, White, Berman, Kesselman
  • Search in Archival Facsimile Documents for Digital History
    Banyasz, Hofstätter, Hanbury
Session 9: Performance
Room: MEGARON G Session Chair: George Papadimitriou
  • Spatiotemporally adaptive compression for scientific dataset with feature preservation – a case study on simulation data with extreme climate events analysis
    Gong, Zhang, Liang, Reshniak, Chen, Rangarajan, Ranka, Vidals, Ullrich, Podhorszki, Klasky
  • Online and Scalable Data Compression Pipeline With Guarantees on Quantities of Interest
    Banerjee, Lee, Choi, Gong, Chen, Chang, Klasky, Rangarajan, Ranka
  • I/O Burst Prediction for HPC Clusters using Darshan Logs
Session 10: Data Management
Room: MEGARON B Session Chair: Renan Souza
  • LivePublication: The science workflow creates and updates the publication
    Ellerm, Gahegan, Adams
  • A Dense Retrieval System and Evaluation Dataset for Scientific Computational Notebooks
    Li, Zhang, Zhao
  • A Method for Constructing Research Data Provenance in High-Performance Computing Systems
    Namiki, Hosomi, Tanushi, Yamashita, Date
  • Achieving Decentralized Authority for Collaborative Data Sharing with Consensus
    Jarosz, Dębowski, Szuma, Opioła, Dutka, Słota, Kitowski